From your image, the road should be aligned to the satellite imagery and the gps traces.
I would leave the gazetted boundaries of the protected areas and accept that it doesn’t align with other features as expected sometimes and hope that future updates have better resolution and alignment with existing roads. The protected area boundaries are quite large and when new data becomes available each year or so the usual method is to merge the new boundaries into the map and replace the old ones and it is not really practical to adjust them to physical features on the ground. But if you find that reasoning is not suitable to your ideal, I expect that no one will object to you making minor adjustments as you are suggesting to align parts to your liking.

In regard to Lake Manchester:
I would have a look at the area in the OSM https://www.openstreetmap.org/relation/8242205#map=15/-27.4782/152.7681 and click on the last editors name and send him a message to discuss the area or just send him a link to this forum query so he can see what is being discussed.
I expect that he has left all the gazetted national parts boundaries as they are, then made other polygons to cover the entire wooded area/s. I expect that he has traced the actual waterline from the most suitable satellite imagery and that has left the gap which is likely to be ground or sand. The gap may grow or recede as the water level changes over the years but it is likely the tree line will remain where it is now mapped. There are a few sections where the tree cover overlays the surface water where streams enter the water body.

You could split the wooded boundary at the southern end where there is a gap in the wooded area and then draw a new way across the gap. You could then select the 2 outer ways to form an outer boundary and the 2 ways of the water polygon and then create a new multipolygon relation. The water has the inner role and tag the relation as natural=sand. You would need to adjust/fudge the boundaries so there are no overlaps.

Most mappers just draw the wooded areas and make an inner where the water bodies are and ignore the sand or ground gaps between the two.
I expect it is just a personal preference in how you prefer to map and I see both methods have merit.