It’s generally not a good idea to use the append option to try & add different country extracts at different times. There are multiple reasons for this, but the simplest one is that append is designed solely for updating the same area.

The best approach is to merge the two pbfs using osmosis or osmconvert and import them as a single file. A more involved one is to change the name of the target tables and build planet_osm_* as views on top of them. I’ve tried this and it works reasonably well, but requires some SQL & PostgreSQL knowledge.